JPT's Proteomics Standards and Controls for Research


Proteomics standards and controls are crucial for ensuring reproducibility and accuracy in mass spectrometry-based proteomics. JPT’s Retention Time Standardization Kit is designed to facilitate standardized retention time alignment, improving the reliability of peptide identification and quantification. Below, you will find key studies referencing JPT’s proteomics standards and controls.

Publications referencing Proteomics Standards and Controls

2025

2025

  • Proteomic diversity in bacteria: Insights and implications for bacterial identification
    Abele et al., Molecular & Cellular Proteomics (2025) - PMID: 39880082
    Products used: Retention Time Standardization Kit
  • Vaccine-induced T cell receptor T cell therapy targeting a glioblastoma stemness antigen
    Chih et al., Nature Communications (2025) 
    Product used: Retention Time Standardization Kit
  • Multicenter Longitudinal Quality Assessment of MS-Based Proteomics in Plasma and Serum
    Kardell et al., Journal of Proteome Research (2025) - PMID: 39918541
    Product used: PROCAL, Retention Time Standardization Kit
  • Upstream open reading frame translation enhances immunogenic peptide presentation in mitotically arrested cancer cells
    Kowar et al., BiorXiv (2025) 
    Product used: Retention Time Standardization Kit
2022-2024

2022-2024

  • Transgenic T cell therapy targeting the glioblastoma stem cell antigen PTPRZ1 with a vaccine-induced, patient-derived T cell receptor
    Bunse et al., Research Square (2024) - PMID: 
    Product used: Retention Time Standardization Kit
  • Using targeted proteomics-based detection of collagen propeptides to quantify fibrillar collagen biogenesis in vitro
    Kühle et al., Biochimie (2024) - PMID: 39278395
    Products used: TrypCheck Kit Fluorescence
  • Electromembrane extraction of peptides based on charge, hydrophobicity, and size – A large-scale fundamental study of the extraction window
    Rye et al., Journal of Seperation Science (2024) - PMID: 39091169
    Product used: PROCAL Retention Time Standardization Kit
Archive

Archive

  • Deep learning boosts sensitivity of mass spectrometry-based immunopeptidomics
    Wilhelm et al., Nature Comunications (2021) - PMID: 34099720
  • Data, Reagents, Assays and Merits of Proteomics for SARS-CoV-2 Research and Testing
    Zecha et al.,  Molecular and Cellular Proteomics (2020) - PMID: 32591346
  • Robust, reproducible and quantitative analysis of thousands of proteomes by micro-flow LC-MS/MS
    Bian et al., Nature Communications (2020) - PMID: 31919466
  • Prosit: proteome-wide prediction of peptide tandem mass spectra by deep learning
    Gessulat et al., Nature Methods (2019) - PMID: 31133760
  • High-Throughput Assessment of Kinome-wide Activation States
    Schmidlin et al., Cell Systems (2019) - PMID: 31521607
  • ProteomeTools: Systematic Characterization of 21 Post-translational Protein Modifications by Liquid Chromatography Tandem Mass Spectrometry (LC-MS/MS) Using Synthetic Peptides
    Zolg et al., Molecular & Cellular Proteomics (2018) - PMID: 29848782
  • PROCAL: A Set of 40 Peptide Standards for Retention Time Indexing, Column Performance Monitoring, and Collision Energy Calibration
    Zolg et al., Proteomics (2017) - PMID: 28872757
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