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Peptide Synthesis

Peptide synthesis is the controlled production of defined amino-acid sequences using chemical synthesis technologies such as solid-phase peptide synthesis (SPPS). JPT combines multiple synthesis platforms and production scales to support research, screening, immunology, proteomics, diagnostics and drug-discovery workflows. 

Our peptide synthesis capabilities range from micro-scale high-throughput production to milligram, gram and larger-scale projects, with options for purification, modification, labeling, pooling, formatting and analytical quality control.


Peptide Synthesis Services


20+ years
peptide expertise
1,000,000+
peptides synthesized per year
20,000+
Global customers
3,000 +
Articles citing JPT's peptides

What Is Peptide Synthesis? 

Peptide synthesis is the stepwise assembly of amino acids into a defined peptide sequence. In chemical peptide synthesis, the order of amino acids is controlled through repeated coupling and deprotection reactions. Protecting groups help direct each reaction to the intended functional group, while purification and analytical testing are used to verify the final product. 

For many research peptides, solid-phase peptide synthesis is the core technology because it enables efficient sequential chain elongation on a resin-bound support. Other approaches, including high-throughput SPOT synthesis, ligation and fragment condensation, can be used when project scale, sequence complexity or library design requires a different strategy.

Peptide Synthesis Methods 

Solid-Phase Peptide Synthesis (SPPS) 

In SPPS, the peptide chain is assembled while attached to a solid support. Repeated deprotection, amino-acid coupling and washing cycles enable controlled chain elongation. JPT uses Fmoc SPPS for many peptide projects.

High-Throughput & SPOT Synthesis 

Parallel synthesis technologies support projects that require many related sequences, including screening libraries, peptide arrays and other high-throughput applications where scale and format differ from conventional single-peptide production.

Ligation & Fragment Condensation 

For selected long or challenging targets, peptide fragments can be prepared separately and joined in a subsequent step. The most appropriate route depends on sequence length, chemistry, required modifications and final project specifications.

Peptide Synthesis Across Scales and Formats


Quantity
Purity
Modifications
Format
Optional Quantification
Quality Grade
Benefits
Micro Scale Peptide Synthesis10 - 50µgcrude, crude with guaranteemodified aa, biotin, phosphorylation, stable-isotope labeled ...tubes, pools, microtiter plates, microarrays, cellulose, ELISAODresearch useFrom only 15€/US$19.50 per peptide! 
>50,000 peptides/month
Mid Scale Synthesis
1mg - 1gcrude to >95%modified aa, biotin, phosphorylation, stable-isotope labeled, AQUA, cyclization…
tubes, pools, tube racks, ELISAQ tag, AAAresearch use, immunomonitoring, cell therapy development, clinical trial immune monitoringPremium quality >5000 peptides/month
Large Scale Synthesis> 1gcrude to >95%modified aa, biotin, phosphorylation, stable-isotope labeled, cyclization, lipids, TFA removal…tubes, poolsQ tag, AAAresearch use, immunomonitoring, cell therapy development, clinical trial immune monitoringEndless range of modifications

Why Choose JPT?


  • ISO 9001:2015 Certified: Our processes follow rigorous, audited quality standards for consistent and dependable peptide synthesis.
  • Berlin-Based Manufacturing: All peptide synthesis is performed in our Berlin facilities, ensuring controlled, reliable production. 
  • Global Scientific Support: With teams in Berlin, the UK and the US, expert guidance is available for any peptide-related project. 
  • Two Decades of Expertise: Our long-standing experience positions us as true leaders in the peptide synthesis industry. 
  • Ethical and Sustainable Practices: We maintain strict environmental, health, and ethical standards across all production steps. 

Explore JPT Peptide Synthesis Capabilities

Custom Peptide Synthesis

Define sequence, amount, purity, modifications and format for an individual peptide project.


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Peptide Libraries

Peptide libraries optimized for cellular and other assays with flexible options for purity, quantity, delivery format, QC, and modifications.

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Peptide Pools

PepMix™ peptide pools deliver efficient stimulation of antigen-specific T cells, offering advantages over full-length proteins.

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Peptide Modifications

Specialized synthesis of long, cyclized, heavy- or dye-labeled peptides and other PTMs using expert-level techniques.


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Bioconjugated Peptides

Comprehensive conjugation services for generating peptide–protein, peptide–lipid, peptide–oligonucleotide, and other molecular conjugates.

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Peptide Arrays & Microarrays

High-throughput peptide arrays for profiling protein interactions, epitope mapping, and enzymatic activity.


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Critical Raw Material

ISO PLUS peptides provide high-purity, traceable critical raw materials for clinical, IVD, and regulated research applications as well as clinical immune monitoring.

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Peptide ELISA

Peptide ELISA platforms enable precise sequence-level epitope mapping or identification of protein-protein interaction binding siteswith exceptional reproducibility. 

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Peptide Analysis

Comprehensive chemical, biological, and bioinformatics analysis services supporting peptide characterization and QC for documentation and regulations.

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Testimonials

"The RV 144 HIV trial is considered as one of first successful HIV vaccine trials. The use of JPT's PepStarTM microarray technology has been very useful for the correlation of the clincial outcome with humoral immune responses. As have the cyclic peptides been from JPT to validate these findings!"

J. Currier, PhD, Walter Reed Army Institute, Rockville, Maryland, USA

"We utilize 15-mer PepMix™ peptide pools encoding for weak tumor associated antigens for immunomonitoring of cancer patients treated with recombinant therapeutic vaccines. Our experience with JPT has been outstanding in regard to product quality and communication with scientific and administrative customer service."

Benedetto Farsaci, MD, National Cancer Institute, NIH, Bethesda, MD, USA

"Our teams at the Vrije Universiteit Brussel deal with a wide variety of projects in different areas of applied biological sciences. For many of them we are in need of peptide related tools and services and we are collaborating with JPT for many years and are very satisfied with the relationship which led to several well received publications."

Prof. Dr. Joost Schymkowitz (Vrije Universiteit, Brussel, Belgium)

FAQs 

JPT manufactures short, medium, and long peptides up to 50 aa in routine. Longer peptides can be prepared in projects.
Use JPT's PepSequencer Peptide Design Tool.  Our scientific experts can also advise on sequence design, solubility, modifications, and project strategy .
We use Fmoc solid-phase peptide synthesis (SPPS) for most peptides, SPOT synthesis for high-throughput libraries, and ligation or fragment condensation for very long or difficult sequences. Click chemistry is used to accommodate complex modifications or structures.

Yes. We routinely produce peptides containing non-natural amino acids, non-commercially available amino acids, and post-translational modifications.


Peptide weight includes moisture and counter-ions from lyophilization. Peptide content reflects the pure peptide amount determined via quantitative amino acid analysis.

Charged peptides dissolve best in aqueous buffers, while hydrophobic peptides may require initial solubilization in organic solvents such as DMSO or DMF. For more information visit our page on Dissolving Peptides. 

We prevent cross-contamination using dedicated equipment, single-use consumables, strict cleaning protocols, and segregated workflows aligned with the required quality grade.

Yes. With our ULTRA bioinformatics approach, we design peptide libraries that cover all relevant sequence variations across viral, bacterial, or cancer-related targets.

Absolutely. We specialize in phosphorylation, methylation, glycosylation, and other key post-translational modifications, as well as peptide modifications such as cyclization, dye or heavy labeling, and more. Have a look!
It confirms that JPT operates a robust Quality Management System according to the latest ISO 9001:2015 standards that ensures consistent and transparent peptide synthesis processes.
Unlike suppliers who report only an average, JPT guarantees that each peptide in a pool or library meets the stated purity.

To reduce toxic synthesis by-products, we purify all peptides with a guaranteed purity level regardless of whether the initial crude material already meets the target purity or not, which significantly reduces chemicals from the synthesis process. If your assay or application is very sensitive, we can substitute TFA with chloride or acetate.

Our proprietary capping technology reduces unwanted deletion sequences that can cause false positive results.
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Find the Right Peptide Synthesis Route for Your Project

Explore the relevant synthesis capability, or contact JPT's peptide experts if your sequence, scale or modification requires a project-specific discussion.

Contact Us

Customer Support


peptide@jpt.com 
T: +49-30-322980-7878

Technical Support Europe

T: +49-30-322980-7830
T: +49-30-322980-7632

Technical Support North America

T: 888.JPT.COM0 (888-578-2660)
X: 888.JPT.COM6 (888-578-2666)

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