PepMix™ Peptide Pools

The use of complete protein-spanning mixtures of overlapping peptides is extremely efficient for immunostimulation of T-lymphocytes and diagnostic applications. JPT Peptide Technologies offers cost-effective ready-to-use PepMixes™ on a per-test basis. In addition, customized PepMixes™ will be prepared in a fast and economical manner according to the specific needs of the customer.

In order to establish reliable and validated T-cell assays such as ELISPOT, appropriate positive and negative controls are essential. Selection of such controls helps to confirm proper functionality of the assay as well as viability of the cells used. In addition, high quality controls are most important to establish standardized assay protocols in clinical setups. Compared to commonly used controls like phytohemagglutinin (PHA) and concanavalin A (ConA) that stimulate T-cells as well as other cell types or full length antigens, synthetic peptide pools offer the advantage of a high batch-to-batch reproducibility, applicability of reliable chemical and biochemical QC/QA measures and shelf stability when stored as freeze dried aliquots.

JPT offers several synthetic peptide pools that can serve as positive controls by stimulating antigen specific CD8+ T cell responses (CEF pools) or both CD4+ & CD8+ T-cell responses (HCMV pp65, IE-1, IE-2 pools). Whereas our CEF pools contain 23 (standard) or 32 (extended) different class-I restricted peptides deducted from CMC, EBV and Influenca virus, our CMV peptide pools are constructed from 15meric peptide scans overlapping by 11 amino acids through full length antigens. Thus, the latter pools are able to stimulate both CD4+ and CD8+ responses within a single control experiment.

In addition, JPT offers a variety of peptide pool based negative controls that offer a complement to the commonly used protocols that make use of cells in medium without respective antigen stimulation.


The following off-the-shelves-PepMixes™ Peptide Pools are available in stock:
Positive control peptide pools for T-cell assays

Negative control peptide pools for T-cell assays
PepMix™ Collection for immune response qualification
Peptide Pools for infectious diseases antigens
Peptide Pools for tumor associated antigens


See also our Custom PepMixes™ Peptide Pools

For off-the-shelves-PepMixes™ Peptide Pools: Order directly via JPT's Webshop or use our Quote Request form

Positive control peptide pools for T-cell assays

PepMix™Product CodeProteinSourcePrimary accession
number
Peptides
HCMVA (IE-1)PM-IE155 kDa immediate-early protein 1 (VIE1_HCMVA)Human cytomegalovirusP13202120
HCMVA (IE-2)PM-IE245 kDa immediate-early protein 2 (VIE2_HCMVA)Human cytomegalovirusP19893143
HCMVA (pp65)PM-PP6565 kDa lower matrix phosphoprotein (PP65_HCMVA)Human cytomegalovirusP06725138
CEF Pool (standard)PM-CEF-S defined HLA class I-restricted
T-cell epitopes
Human cytomegalovirus,
Epstein-Barr virus, Influenza virus
n.a.23
CEF Pool (extended)PM-CEF-Edefined HLA class I-restricted
T-cell epitopes
Human cytomegalovirus,
Epstein-Barr virus, Influenza virus
n.a.32
CEFT PoolPM-CEFTdefined HLA class I-and II- restricted T-cell epitopesHuman cytomegalovirus, Epstein-Barr virus, Influenza virus, C, tetanin.a.27
EF PoolPM-EFdefined HLA class I-restricted
T-cell epitopes
Epstein-Barr virus, Influenza virusn.a.20

PepMix™ Collection for immune response qualification

PepMix™ CollectionProduct CodeProteinSourcePrimary accession
number
Peptides
HCMVPM-Col-HCMV19 different Human cytomegalovirus (HHV-5)19 differentn.a.

Negative control peptide pools for T-cell assays

PepMix™Product CodeProteinSourcePrimary accession
number
Peptides
HIV (Con B gag motif)PM-HIVgagCon B gag motif Human immunodefficiency virusn.a.123
Human (Actin)PM-ACTSActin, alpha skeletal muscleHomo Sapiens (Human)P6813392
Human (HLA classI
Ig-like C1 domain)
PM-C1HLA class I histocompatibility antigen, A-36 alpha chainHomo Sapiens (Human)P30455aa208-29519
Human (MOG)PM-MOGMyelin-oligodendrocyte glycoprotein (MOG)Homo Sapiens (Human)Q1665329

Peptide Pools for infectious diseases

PepMix™Product CodeProteinSourcePrimary
accession
number
Peptides
Adenovirus
HAdV-3 (hexon protein)PM-HAdV3Hexon proteinHuman adenovirus 5 (HAdV-5)P36849234
HAdV-5 (penton protein)PM-HAdV5Penton proteinHuman adenovirus 3 (HAdV-3)P12538140
BKV
BKV (capsid protein VP1)PM-BKV-VP1Major capsid protein VP1BK polyomavirusP1499688
BKV (capsid protein VP2)PM-BKV-VP2Minor capsid protein VP2BK polyomavirusP0309485
BKV (capsid protein VP2, isoform VP3)PM-BKV-VP3Minor capsid protein VP2 (isoform VP3)BK polyomavirusP03094_256
BKV (large T antigen)PM-BKV-LTALarge T antigenBK polyomavirusP14999170
BKV (small T antigen)PM-BKV-STASmall t antigenBK polyomavirusP0308241
EBV
EBV (BMLF1)PM-EBV-BMLF1mRNA export factor EB2Epstein-Barr virus (HHV-4)Q04360117
EBV (BMRF1)PM-EBV-BMRF1DNA polymerase processivity factor BMRF1Epstein-Barr virus (HHV-4)P0319199
EBV (BRLF1)PM-EBV-BRLF1Transcription activator BRLF1Epstein-Barr virus (HHV4)P03209149
EBV (BZLF1)PM-EBV-BZLF1Trans-activator protein BZLF1Epstein-Barr virus (HHV4)P0320659
EBV (EBNA1)PM-EBV-EBNA1Epstein-Barr nuclear antigen 1 (EBNA1)Epstein-Barr virus (HHV4)P03211158
EBV (EBNA2)PM-EBV-EBNA2Epstein-Barr nuclear antigen 2 (EBNA2)Epstein-Barr virus (HHV4)P12978119
EBV (EBNA3a)PM-EBV-EBNA3aEpstein-Barr nuclear antigen 3 (EBNA3a)Epstein-Barr virus (HHV4)P12977234
EBV (EBNA3b)PM-EBV-EBNA3bEpstein-Barr nuclear antigen 4 (EBNA3b)Epstein-Barr virus (HHV4)Q1HVG4279
EBV (EBNA3c)PM-EBV-EBNA3cEpstein-Barr nuclear antigen 6 (EBNA3c)Epstein-Barr virus (HHV4)Q69140265
EBV (EBNA-LP)PM-EBNA-LPEpstein-Barr nuclear antigen leader proteinEpstein-Barr virus (HHV4)Q8AZK7124
EBV (GP 340)PM-EBV-GP340Envelope glycoprotein GP340/GP220Epstein-Barr virus (HHV4)P03200224
EBV (LMP1)PM-EBV-LMP1Latent membrane protein 1 (LMP1)Epstein-Barr virus (HHV4)P0323094
EBV (LMP2)PM-EBV-LMP2Latent membrane protein 2 (LMP2)Epstein-Barr virus (HHV4)P13285122
HCMVA
HCMVA (IE-1)PM-IE155 kDa immediate-early protein 1 (IE-1)Human cytomegalovirus (HHV-5)P13202120
HCMVA (IE-2)PM-IE245 kDa immediate-early protein 2 (IE-2)Human cytomegalovirus (HHV-5)P19893143
HCMVA (pp65)PM-PP6565 kDa phosphoprotein (pp65)Human cytomegalovirus (HHV-5)P06725138
HCMVA (UL28)PM-UL28Uncharacterized protein UL28Human cytomegalovirus (HHV-5)P1684792
HCMVA (UL32)PM-UL32Large structural phosphoproteinHuman cytomegalovirus (HHV-5)P08318260
HCMVA (UL36)PM-UL36Uncharacterized protein UL36Human cytomegalovirus (HHV-5)P16767117
HCMVA (UL40)PM-UL40Uncharacterized protein UL40Human cytomegalovirus (HHV-5)P1678053
HCMVA (UL48)_sub 1 & 2PM-UL48Deneddylase UL48Human cytomegalovirus (HHV-5)P16785229+229
HCMVA (UL55)PM-UL55Envelope glycoprotein B (UL55)Human cytomegalovirus (HHV-5)P06473224
HCMVA (UL82)PM-UL8271 kDa phosphoprotein (UL82)Human cytomegalovirus (HHV-5)P06726137
HCMVA (UL86)PM-UL86Major capsid protein (UL86)Human cytomegalovirus (HHV-5)P16729340
HCMVA (UL94)PM-UL94Capsid-binding protein UL94Human cytomegalovirus (HHV-5)P1680084
HCMVA (UL99)PM-UL99Tegument protein UL99Human cytomegalovirus (HHV-5)P1320045
HCMVA (UL103)PM-UL103Protein UL103Human cytomegalovirus (HHV-5)P1673460
HCMVA (UL151)PM-UL151Orf UL151Human cytomegalovirus (HHV-5)Q6840582
HCMVA (UL153)PM-UL153Orf UL153Human cytomegalovirus (HHV-5)Q6840867
HCMVA (US3)PM-US3Unique short US3 glycoproteinHuman cytomegalovirus (HHV-5)P0971244
HCMVA (US24)PM-US24Tegument protein US24Human cytomegalovirus (HHV-5)P09700123
HCMVA (US29)PM-US29Uncharacterized protein HHRF4 (US29)Human cytomegalovirus (HHV-5)P09705113
HCMVA (US32)PM-US32Uncharacterized protein HHRF7 (US32)Human cytomegalovirus (HHV-5)P0970843
HPV
HPV 16 (Protein E6)PM-HPV 16-E6E6Human papillomavirus type 16 (HPV)P03126 37
HPV 16 (Protein E7)PM-HPV 16-E7E7Human papillomavirus type 16 (HPV)P0312922
HPV 18 (Protein E6)PM-HPV 18-E6E6Human papillomavirus type 18 (HPV)P0646337
HPV 18 (Protein E7)PM-HPV 18-E7E7Human papillomavirus type 18 (HPV)P06788 24
HIV
HIV-1 (Con B gag motif)PM-HIVgagHIV-1 (Con B gag motif)Human immunodeficiency virus n.a.123
Influenza A
Influenza A (HA /Brisbane (H1N1))PM-INFA-HABrisHemagglutininInfluenza A virus (A/Brisbane/59/2007(H1N1))BOVX44139
Influenza A (HA /California (H1N1))PM-INFA-HACalHemagglutininInfluenza A virus (A/California/08/2009(H1N1))C3W5X2140
Influenza A (MP1 (H3N2))PM-INFA_MP1Matrix protein 1Matrix protein 1Q67157110
Influenza A (MP1 /California (H1N1))PM-INFA-MP1-H1N1Matrix protein 1Influenza A virus (A/California/08/2009(H1N1))C3W5Z861
Influenza A (MP2 /California (H1N1))PM-INFA_MP2Matrix protein 2Influenza A virus (A/California/08/2009(H1N1))C3W5Z722
Influenza A (Neuroamidase /California (H1N1)PM-INFA_NANeuraminidaseInfluenza A virus (A/California/08/2009(H1N1))C7FH14115
Influenza A (NP (H3N2))PM-INFA_NPNucleocapsid proteinInfluenza A virus (strain A/Kitakyushu/159/1993 H3N2)O91743122
RSV
RSV (Fusion glycoprotein F0)PM-RSV-FGF0Fusion glycoprotein F0Human respiratory syncytial virusO36634141
RSV (nucleocapsid protein N)PM-RSV-NCPNNucleoprotein NHuman respiratory syncytial virusO4205395
VZV
VZV IE62_sub 1 & 2PM-VZV-IE62Transcriptional transactivator IE62Varicella-zoster virus (strain Oka vaccine)Q8AZM1325
VZV IE63PM-VZV-IE62Transcriptional transactivator IE63Varicella-zoster virus (strain Oka vaccine)Q77NN7-167
Miscellaneous
Candida (MP65)PM-CAND-MP65Mannoprotein MP65Candida albicans (Yeast)Q9HEP192
HBV Iarge envelope proteinPM-HBV-lEPLarge envelope proteinHepatitis B virus (HBV-A)P1710198
HHV6 (U54)PM-HHV-U54U54uman herpesvirus 6BQ9QJ29112
Yellow fever (NS4B)PM-YF-NS4BYellow fever Non-structural protein 4BYellow fever virusP03314 aa2257–250660

Peptide Pools for tumor associated antigens

PepMix™Product CodeProteinSourcePrimary
accession
number
Peptides
BREAST / PROSTATE
Human (Mammaglobin A)PM-MamAMammaglobin-AHomo sapiens (Human)Q1329621
Human (NY-ESO-1)PM-NYECancer/testis antigen 1 (NY-ESO-1)Homo sapiens (Human)P7835843
Human (Prostate-specific antigen PSA)PM-PSAProstate-specific antigenHomo sapiens (Human)P0728863
Human (SSX2)PM-SSX2Protein SSX2Homo sapiens (Human)Q1638545
EPITHELIA
Human (CEA)PM-CEACarcinoembryonic antigen-related cell adhesion molecule 5Homo sapiens (Human)P06731173
Human (Claudin-6)PM-Cl-6Claudin-6Homo sapiens (Human)P5674753
Human (Stromelysin-3, MMP11)PM-MMP11Stromelysin-3 (MMP11)Homo sapiens (Human)P24347121
Hematopoietic tumors
Human (Myc protein)PM-cMycMyc proto-oncogene proteinHomo sapiens (Human)P01106107
MELANOMA
Human (MAGEA1)PM-MAGEA1Melanoma-associated antigen 1 (MAGEA1)Homo sapiens (Human)P4335575
Human (MAGEA3)PM-MAGEA3Melanoma-associated antigen 3 (MAGEA3)Homo sapiens (Human)P4335776
Human (MAGEA4)PM-MAGEA4Melanoma-associated antigen 4 (MAGEA4)Homo sapiens (Human)P4335877
Human (Melan-A/MART-1)PM-MelAMelanoma antigen recognized by T-cells 1 (MART-1)Homo sapiens (Human)Q1665527
Human (Melanocyte protein Pmel 17 gp100)PM-GP100Melanocyte protein Pmel 17 (gp100)Homo sapiens (Human)P40967163
Human (Prame/OIP4)PM-OIP4Melanoma antigen preferentially expressed in tumors (PRAME/OIP4)Homo sapiens (Human)P78395125
Vaccinia Virus
VACV (Cell surface-binding protein, MVA105L)PM-MVA-105LCell surface-binding protein (MVA105L)Vaccinia virus (strain Ankara)O5721174
VACV (Host range protein 2, MVA018L)PM-MVA-018LHost range protein 2 (MVA018L)Vaccinia virus (strain Ankara)P6859835
VACV (Major core protein P4a, MVA 121L)_Sub 1 & 2PM-MVA-121LMajor core protein P4a (MVA 121L)Vaccinia virus (strain Ankara)O57223112 + 111
VACV (MVA 074R)PM-MVA-074RPutative 49.8k protein (MVA 074R)Vaccinia virus (strain Ankara)O57196106
VACV (MVA093L)PM-MVA-093LIMV heparin binding surface protein  (MVA093L)Vaccinia virus (strain Ankara)O5720679
VACV (MVA189R)PM-MVA-189RPutative 21.7k protein (MVA189R)Vaccinia virus (strain Ankara)O5726545
Wilms tumor1
Human (WT1/WT33)PM-WT1Wilms tumor protein (WT33)Homo sapiens (Human)P19544110
Miscellaneous
Arabidopsis (WRKY47)PM-WRKProbable WRKY transcription factor 47Arabidopsis thaliana (Mouse-ear cress)Q9ZS17120
Human (Cyclin-B1)PM-CYC_B1G2/mitotic-specific cyclin-B1Homo sapiens (Human)P14635106
Human (Erb2_ECD)PM-ERB_ECDReceptor tyrosine-protein kinase erbB-2 (extra cellular domain)Homo sapiens (Human)P04626-1 aa1-655161
Human (ErbB2_ICD)PM-ERB_ICDReceptor tyrosine-protein kinase erbB-2 (intracellular domain)Homo sapiens (Human)P04626 aa662-1255146
Human (Histone H1.2)PM-H1Histone H1.2Homo sapiens (Human)P1640351
Human (Histone H4)PM-H4Histone H4Homo sapiens (Human)P6280523
Human (P53)PM-p53

 

Cellular tumor antigen p53 Homo sapiens (Human)Q2XN9896
Human (SOX-2)PM-SOX-2Transcription factor SOX-2Homo sapiens (Human)P4843177
Human (TCRgamma alternate reading frame protein TARP)PM-TARPTCRgamma alternate reading frame protein Homo sapiens (Human)A2JGV312
Human (Tyrosinase)PM-PM-Tyr_HTyrosinase (human)Homo sapiens (Human)P14679117
Human (Tyrosinase-related protein 2)PM-TRP-2L-dopachrome tautomerase (Tyrosinase-related protein 2)Homo sapiens (Human)P40126127
Mouse (Tyrosinase)PM-PM-Tyr_MTyrosinase (mouse)Mus musculus (Mouse)P11344117
Pongo abelii (Survivin)PM-SurvivinBaculoviral IAP repeat-containing protein 5 (Survivin) Pongo abelii (Sumatran orangutan)Q5RAH933

Custom PepMixes™ Peptide Pools

Custom PepMixes™ are available via our High Throughput Custom Synthesis program. Protein primary sequences provided will be chemically synthesized as overlapping peptides, purified and analyzed to comply with the requirements of T-cell assays. All production steps are optimized to avoid contaminations and failure sequences which may lead to false positive T-cell responses or inhibition of T-cell responses.

Pooling and aliquotation will be performed using validated protocols ensuring the presence of all peptides in the respective pools. Our fully automated aliquotation service yields freeze dried pool aliquots avoiding deterioration of peptides in DMSO stock solutions.

Custom PepMix Production

Custom PepMix Production

For customized PepMixes™: Quote Request or contact our customer support via email

Applications for PepMix™ Peptide Pools

  • Immunostimulation of T-lymphocytes
  • Monitoring of immune status during diseases
  • Assessment of vaccine efficacy

Benefits of PepMix™ Peptide Pools

  • Equivalent or better stimulation of CD4 and CD8
  • T-cell responses compared to whole protein antigens
  • Simultaneous detection of CD4 and CD8 responses in a single sample
  • Improved responses in stored blood and PBM cells compared to whole protein antigens

Single Peptides

In addition to the mixes, peptides can also be ordered as single peptide aliquots to validate the results found using the mixes. All peptides and mixes will be quality controlled to ensure batch-to-batch reproducibility!

Testimonials for PepMix™ Peptide Pools

"I have used JPT's peptide pools (PepMix) for years now, with great satisfaction! First CMV derived peptides and now also EBV. So far we have published data in one publication and plan several more in the near future."

Anna Karin Lidehaell (Uppsala University, Clin. Immunol., Uppsala, Sweden)

"The focus of the Clinical Immunology Group at the German Rheumatism Research Centre is to study the role of cells and molecules in the origin and progression of autoimmune and other diseases. In our hands PepMixes™ were found to be effective in monitoring the immune status of various patient populations but show also promise for the development of novel immuno therapy approaches."

Andreas Thiel, PhD (German Rheumatism Research Centre, Clin. Immunol., Berlin, Germany)

PepMix

Selected References for PepMix™ Peptide Pools:

  • Clonotype Analysis of Cytomegalovirus-Specific Cytotoxic T Lymphocytes 
    Babel et al., Journal of the American Society of Nephrology (2008) (abstract)
  • Prophylactic Transfer of CD8-Depleted Donor Lymphocytes after T-cell Depleted Reduced-Intensity Transplantation
    Meyer et al., Blood (2008) (abstract)
  • Massive Load of Functional Effector CD4+ and CD8+ T Cells against Cytomegalovirus in Very Old Subjects
    Myers et al., J. Immunol. (2007) (abstract)
  • Reconstitution of Adenovirus-Specific Cell-mediated immunity in pediatric patients after Hematopoietic Stem Cell Transplantation
    Myers et al., Bone Marrow Transplant. (2007) (abstract)
  • Monoculture-Derived T Lymphocytes Specific for Multiple Viruses Expand and Produce Clinically Relevant Effects in Immunocompromised Individuals
    Leen at al., Nat. Med. (2006) (abstract)
  • Results of a Cytomegalovirus (CMV)-Specific CD8+/Interferon- Gamma+ Cytokine Flow Cytometry Assay Correlate with Clinical Evidence of Protective Immunity in Patients with AIDS with CMV Retinitis
    Jacobson et al., J. Infect. Dis. (2004) (abstract)
  • Functional Comparison of T Cells Recognizing Cytomegalovirus pp65 and Intermediate-Early Antigen Polypeptides in Hematopoietic Stem-Cell Transplant and Solid Organ Transplant Recipients
    Lacey et al., J. Infect. Dis. (2006) (abstract)
  • Acquisition of Direct Antiviral Effector Functions by CMV-Specific CD4+ T Lymphocytes with Cellular Maturation
    Casazza et al., J. Exp. Med. (2006) (abstract)
  • Protection from Cytomegalovirus After Transplantation is Correlated with Immediate Early 1–specific CD8 T cells
    Bunde et al., Eur. J. Exp. Med. (2005) (abstract)
  • HLA Type-Independent Generation of Antigen-Specific T Cells for Adoptive Immunotherapy
    Hammer et al., Eur. J. Immunol. (2005) (abstract)
  • Generation of Cytomegalovirus (CMV)-Specific T-lymphocytes Using Protein-Spanning Pools of pp65-Derived Overlapping Pentadecapeptides for Adoptive Immunotherapy
    Trivedi et al., Blood (2005) (abstract)
  • Confirmation of Mycobacterium Tubercolosis Infection by Flow Cytometry After Ex Vivo Incubation of Peripheral Blood T Cells with an ESAT-6-Derived Peptide Pool
    Tesfa et al., Cytometry Part B (Clinical Cytometry) (2004) (abstract)
  • CMV Antigen-Specific CD4+ and CD8+ T Cell IFN Expression and Proliferation Responses in Healthy CMV-Seropositive Individuals
    Sinclair et al., Viral Immunol. (2004), (abstract)
  • Recent Advances in the Development of HIV-1 Vaccines Using Replication-Incompetent Adenovirus Vectors
    Shiver and Emini, Annual Review of Medicine (2004), (abstract)
  • Mapping T Cell Epitopes by Flow Cytometry
    Hoffmeister et al., Methods (2003), (abstract)
  • Cytomegalovirus (CMV) Phosphoprotein 65 Makes a Large Contribution to Shaping the T Cell Repertoire in CMV-Exposed Individuals
    Kern et al., J. Infect. Dis.(2002), (abstract)
  • Use of Overlapping Peptide Mixtures as Antigens for Cytokine Flow Cytometry
    Maecker et al., J. Immunol. Methods (2001), (abstract)
  • Analysis of CD8 T Cell Reactivity to Cytomegalovirus Using Protein-Spanning Pools of Overlapping Pentadecapeptides
    Kern et al., Eur. J. Immunol. (2000), (abstract)
  • Putative Immunodominant Human Immunodeficiency Virus-specific CD8+ T-Cell Responses Cannot Be Predicted by Major Histocompatibility Complex Class I Haplotype
    Betts et al., J. Virol. (2000), (abstract)
  • Identification of T-cell Epitopes Using ELISpot and Peptide Pool Arrays, Tobery and Caulfield
    Methods in Molecular Medicine : Molecular Diagnosis of Infectious Deseases, 2/e; Edited by J.Decker and U. Reischl; Humana Press Inc, Totowa, NJ, (abstract)

    More references under JPT Publications/Literature
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